pytometry.plotting.plotdata

pytometry.plotting.plotdata(adata, key='signal_type', normalize=None, cofactor=10, figsize=(15, 6), option='area', save='', **kwargs)

Creating histogram plot from Anndata object.

Parameters

• adata (AnnData) – AnnData object containing data.

• cofactor (float) – float value to normalize with in arcsinh-transform

• normalize (Optional[str]) – choose between “arcsinh”, “biExp” and “logicle”

• option (str) – Switch to choose directly between area and height data.

• save (str) – Filename to save the shown figure

• kwargs – Passed to matplotlib.pyplot.savefig()

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